Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891089.1_cds_XP_016445801.1_40722
CDS Infomation

[gene=LOC107770989] [db_xref=GeneID:107770989] [protein=pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like] [protein_id=XP_016445801.1] [location=57089..58648] [gbkey=CDS]
Sequence

ATGAGGATATCAAATATTGCACCTAATAGTTTTACATTTACTTTTCTCTTGAGGTGTTTT
GAGTCTTTTGACTCTTTAGAAGCTGGCCAAGTAGTGCATGGTCACATTGTGAAGTTGGGT
TTTGAGTCTAGTGTGTTTGCTAAGAATACCCTTATGGATTTTTATGCTAAATGTGGTGGG
AATTTAGACTCAGCTCGGAAGGTGTTTGATGAAATGCCTGATCGGGATGTTGTTTCGTGG
AACACGATGATTGGTGGTTATATGATTCATGGTGATCAAGAACGTGCCCTTTGTTTATTC
GAGGCTATGCCCGAGAGGAATGTTGTTACGTGGAATTCGGTTATTGCTGGGCTATTGAAA
GCAGGGAACATGGAGTTGGCTCGTTCTGTTTTTAAGCGTATGCCGGAGAAAAATGATGTT
TCCTGGAACACAATGATTTCTGGATGTGTAAAGTTAAGTGACATAGAAGCTGCTATAGCT
GTTTTTGATAAGATGCCGGAGAAAAGTGTAATTTCTTGGACTGCAATGGTGTCAGGATAT
GCTACAATTGGTGATCTTCAATCAGCAAGAAAGATGTTTGACCGAATACCAGCAAAAAAT
GTGGTTTCATGGAATGCCTTGATTGCTGGATATGTAAATTACCATATGTTTGATGAAGCT
CTTTCAGTGTTTCAGCATATGTTGATCGATGGGAATTGCAAACCCAATCAGACCACTTTG
ATTAGTATACTCTCAGCTTGTTCACATTTGGGATCTCATGAGCATGGAAAATGGATCGAT
TCTTTTATAAGAAAGAACAAATTTGACTTATCAGTCCCACTAGGAAATGCTTTAATTGAT
ACATTTGCAAAATGTGGAGATATGGAAAATGCAAAAGCAGTTTTCTTAAGGATGGCTCAG
AGATGCATAATTACTTGGACTACAATGATATCAGGATTAGCAGTGAATGGGCACTGCAGA
GACGCCCTAGAACTATACGAAAAGATGTGCTTGGAGGGAGTAGAGCCGGATGATGTTGTA
TTTATTGCTGTTCTGTCAGCTTGCACTCACGGTGGGCTGCTGGAAGAAGGGAAAAGGGTA
TTTGACCAGATGGTGACGAAGTTTGGCATTAAACCGCGGATTGATCATTATGGATGCATG
GTTGATCTTCTTGGCCGAGCTGGAAAGTTTGAAGAAGCACTGAGTTTCATTAAGAGCATG
CATTTGGAACCTAACGCAGTCATTTGGGCCACTTTACTTTCTGCTTGTAAAATTCATGGA
AATGGGGAGTTGTTAGATTCCTTAACCCGGAGGATCCTGGAGCAAGAGCCTGACAACCCG
AGTTATTTGACATTGATAATGAACTTAAGCTCTTCTATTGGGCGGTGGCAGGATGCCTTG
AACTTCCGTAGAGCTACTAGAGACAAGGGAATAGAAAAAATTCCTGGTTGTAGCTCAATC
CAAATAGGAAATAGTGTCCATGAGTTCTTAGCTAAAGATACAAAGCACTCACAAAGGAAG
GAAATCTATAGAGTTTTAGGGTGTTTAAATGGACACTTAAAATTATGTGAGGTCGAATGA

Peptide Sequence

PEP ID

XP_016445801.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Nicotiana tabacum]
Sequence

MRISNIAPNSFTFTFLLRCFESFDSLEAGQVVHGHIVKLGFESSVFAKNTLMDFYAKCGG
NLDSARKVFDEMPDRDVVSWNTMIGGYMIHGDQERALCLFEAMPERNVVTWNSVIAGLLK
AGNMELARSVFKRMPEKNDVSWNTMISGCVKLSDIEAAIAVFDKMPEKSVISWTAMVSGY
ATIGDLQSARKMFDRIPAKNVVSWNALIAGYVNYHMFDEALSVFQHMLIDGNCKPNQTTL
ISILSACSHLGSHEHGKWIDSFIRKNKFDLSVPLGNALIDTFAKCGDMENAKAVFLRMAQ
RCIITWTTMISGLAVNGHCRDALELYEKMCLEGVEPDDVVFIAVLSACTHGGLLEEGKRV
FDQMVTKFGIKPRIDHYGCMVDLLGRAGKFEEALSFIKSMHLEPNAVIWATLLSACKIHG
NGELLDSLTRRILEQEPDNPSYLTLIMNLSSSIGRWQDALNFRRATRDKGIEKIPGCSSI
QIGNSVHEFLAKDTKHSQRKEIYRVLGCLNGHLKLCEVE

Transcript Sequence

Gene sequence data has not been registered.